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Micro Vendors

These databases have been provided to us under collaborative agreements with each respective vendor. Molecules in the original catalogs may not appear in ZINC because they do not pass our filters, or they have not been processed yet. ZINC may be used free of charge for research by individuals and institutions. Whereas you are free to share the results of a ZINC search or a screen of molecules from ZINC, you may not redistribute major portions of ZINC without the express written permission of John Irwin. Additional usage notes may be found below the table.
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Vendor
Information

Name
Email
Phone
Fax

Catalog
Information

Source- entries,
Version/ Date

ZINC
Information

Loaded,
Filtered,
Sole- source,
Depleted

Diversity
Information

Cluster represent-
atives
at a given Tanimoto cutoff

Accela ChemBio Inc
info at accelachem.com 
p.+1 858 699 3322
f.+1 858 876 1948
3124
2010.5
3300 download
169
294
NYA
90%:2264
80%:1364
70%:665
60%:327
Adesis
info at adesisinc.com 
p.+1 302 323 4880
f.+1 302 323 4879
431
2007-02-10
960 download
54
150
NYA
90%:742
80%:369
70%:162
60%:51
AF ChemPharm
enquiries at afchempharm.co.uk 
p.+44 114 253 0022
f.+44 114 283 5941
921
2010.2
1254 download
62
881
NYA
90%:703
80%:542
70%:394
60%:278
AstaTech
sales at astatechinc.com 
p.+1 215 785 3197
f.+1 215 785 2656
4679
2008.5
4859 download
213
983
NYA
90%:2943
80%:1895
70%:1034
60%:537
BioBlocks
sales at bioblocks.com 
p.+1 858 558 5900
f.+1 858 558 5911
2276
2009.5
2402 download
6
1283
NYA
90%:762
80%:252
70%:135
60%:77
BioSynth
welcome at biosynth.ch 
p.+41 71 858 20 20
f.+41 71 858 20 30
2088
2007
2127 download
383
1022
NYA
90%:786
80%:448
70%:271
60%:180
Calbiochem
customer.service at emdbioscience 
p.+1 800 854 3417
f.+1 800 776 0999
665
2008.1
761 download
101
369
NYA
90%:456
80%:393
70%:344
60%:281
Cayman Chemical
cayman at caymanchem.com 
p.+1 734 971 3335
f.+1 734 971 3640
1623
2009.2
2458 download
346
1790
NYA
90%:685
80%:528
70%:430
60%:332
ChemDiv BuildingBlocks
chemdiv at chemdiv.com 
p.858-794-4860
f.858-794-4931
4806
2009.5
5821 download
185
1934
NYA
90%:3211
80%:2218
70%:1445
60%:868
Chemik
info at chemik.com 
p.+86 574 87296330
f.+86 574 87297461
1920
2008.5
1590 download
317
90
NYA
90%:1006
80%:563
70%:277
60%:145
Chemivate
enquiries at chemivate.com 
p.+44 (0) 1909 477677
f.+44 (0) 1909 477677
1108
2009.10
1456 download
3
1436
NYA
90%:398
80%:98
70%:28
60%:15
CiVentiChem
sales at cvchem.com 
p.+1 (919) 678-0702
f.+1 (919) 678-0706
2014
2007
2234 download
78
1151
NYA
90%:1320
80%:871
70%:602
60%:370
CNH Technologies
info at cnhtechnologies.com 
p.+1 781 933-0362
f.+1 781 933-1839
244
2009.10
217 download
18
32
NYA
90%:123
80%:85
70%:61
60%:45
Combi-Blocks
sales at combi-blocks.com 
p.+1 877 525 6257
f.+1 858 635 8991
3320
2005.11
1641 download
1562
0
NYA
90%:1141
80%:633
70%:331
60%:157
Enzo Life Sciences
info-usa at enzolifesciences.com 
p.+1 631 694 7070
f.no fax
1172
2010.2
1295 download
253
376
NYA
90%:788
80%:708
70%:603
60%:488
Euroasia
marketing at euroasiarnd.com 
p.+91 (22) 67745555
f.no fax
85
2009.10
73 download
14
25
NYA
90%:68
80%:65
70%:63
60%:57
Focus Synthesis
focus_synthesis at focussynthesis 
p.+1 858 485 5431
f.+1 858 485 5439
2421
2008.5
2713 download
321
461
NYA
90%:2025
80%:1514
70%:1067
60%:659
Frinton
sales at frinton.com 
p.+1 856 722 7037
f.+1 856 439 1977
1130
2005.10
1103 download
190
23
NYA
90%:769
80%:562
70%:368
60%:178
Frontier
sales at frontiersci.com 
p.+1 435 853 1901
f.+1 435 753 6731
857
2009.4
617 download
502
147
NYA
90%:484
80%:338
70%:198
60%:120
IBScreen Bioactives
screen at ibscreen.chg.ru 
p.+7 (095) 788 0651
f.+7 (095) 788 0652
718
2008.11
896 download
52
0
NYA
90%:616
80%:540
70%:451
60%:380
Indofine
chemical at indofinechemical.com 
p.+1 908 359 6778
f.+1 908 359 1179
1332
2009.1
1725 download
18
122
NYA
90%:453
80%:211
70%:111
60%:77
Infarmatik
sales at infarmatic.com 
p.+36 1 399 3311
f.+36 1 399 3448
212
2010.5
299 download
0
249
NYA
90%:113
80%:77
70%:59
60%:39
IS Chem. Tech Building Blocks
sales at ispharm.com 
p.+86 21 52682738
f.+86 21 52682739
3172
2009.5
3308 download
486
0
NYA
90%:2380
80%:1839
70%:1132
60%:608
IS Chemical Technology
sales at ispharm.com 
p.+86 21 52682738
f.+86 21 52682739
2145
2009.5
3630 download
343
834
NYA
90%:2570
80%:1977
70%:1276
60%:725
LOPAC1280
sales at sial.com 
p.phone
f.fax
1280
2005.10
1743 download
26
310
NYA
90%:1034
80%:871
70%:714
60%:536
MicroCombiChem
info at microcombichem.com 
p.+49-(0)611-962-5284
f.+49-(0)611-962-9265
459
2009.1
566 download
9
443
NYA
90%:282
80%:196
70%:150
60%:109
MicroSource
sales at msdiscovery.com 
p.+1 (860) 350-8078
f.+1 (860) 354-5300
2117
2004-10
3879 download
102
648
NYA
90%:1532
80%:1206
70%:925
60%:603
Nagase
dale at nagase-nam.com 
p.+1 212 703 1340
f.+1 212 398 0687
66
2009.11
68 download
2
20
NYA
90%:21
80%:13
70%:8
60%:5
PepTech
service at peptechcorp.com 
p.+1 781 273 5400 +1 7
f.6000
1503
2005.6
1539 download
5
653
NYA
90%:385
80%:167
70%:63
60%:20
Sequoia Research Products
info at seqchem.com 
p.+44 7802 291086
f.+44 118 976 7586
2266
2008.6
2407 download
384
100
NYA
90%:1303
80%:1021
70%:790
60%:567
Shanghai Sinofluoro Scientific
USA at sinofluoro.com 
p.+1 (484) 892-5311
f.+1 (610) 465-9728
1005
2009.4
849 download
187
21
NYA
90%:603
80%:351
70%:175
60%:87
Sinova
sales at sinovainc.com 
p.+1 301 961 1525
f.+1 240 235 4288
3335
2008.6
3074 download
122
1828
NYA
90%:1715
80%:822
70%:509
60%:293
Specs Building Blocks
info at specs.net 
p.+31 15 251 8111
f.+31 15 251 8181
999
2009.11
9858 download
0
79
NYA
90%:6945
80%:4685
70%:2744
60%:1454
spectrum
sales at spectrumchemical.com 
p.+1 310 516 8000
f.+1 310 516 7512
2000
2008.1
3244 download
277
241
NYA
90%:1407
80%:1089
70%:815
60%:540
SynChem
catalog at synchem.com 
p.+1 847 298 2436
f.+1 847 298 2439
937
2007
1011 download
14
0
NYA
90%:720
80%:413
70%:267
60%:163
SYNCHEM OHG
info at synchem.de 
p.+49 5662 40873 0
f.+49 5662 40873 20
2127
2008.6
2003 download
214
744
NYA
90%:1582
80%:1036
70%:645
60%:397
SynQuest Laboratories
info at synquestlabs.com 
p.+1 (386) 462-0788
f.+1 (386) 462-7097
3516
2007
2218 download
1509
94
NYA
90%:1110
80%:520
70%:237
60%:122
Synthonix
info at synthonix.com 
p.+49 8051 965 16 60
f.+49 8051 16 61
1817
2007
1505 download
341
425
NYA
90%:1178
80%:814
70%:496
60%:281
Tocris
customerservice at tocris.co.uk 
p.+44 117 916 3333
f.+44 117 916 3344
974
2005.10
1177 download
162
284
NYA
90%:784
80%:700
70%:604
60%:488
Toslab Building Blocks
toslab at toslab.com 
p.+7 343 3754135
f.+7 343 3753135
1132
2009.7
1638 download
89
36
NYA
90%:701
80%:488
70%:338
60%:229
Tyger
sales at tygersci.com 
p.(888) 329-8990
f.(609) 434-0143
2670
2005.10
3345 download
150
1381
NYA
90%:1653
80%:1012
70%:606
60%:356
Ubichem
sales at ubichem.com 
p.+36 1 347 5060
f.+36 1 347 5061
1220
2008.11
1230 download
87
380
NYA
90%:840
80%:492
70%:307
60%:200
Zannan
business at zannanpharma.com 
p.+86-21-5442-6233
f.+86-21-5442-6233
1514
2009.5
2893 download
73
2158
NYA
90%:789
80%:351
70%:158
60%:88
The following limits are in effect:
  • Molecules per mol2 or SDF format file: 100,000
  • Entries per flexibase file 20,000
  • Typical size of mol2/sdf/flexibase files: 20 to 100 MB
  • Number of large files that may be downloaded concurrently: 2
In the downloads above, we offer four formats: SMILES, mol2, SDF, and flexibase formats. Most docking programs we know of use mol2. We urge you to not download Flexibaseunless you are using DOCK3.5.54.

We have generated protonated forms in 3 pH ranges. The reference structure ("ref") is a single representative structure at pH 7. The middle pH range ("mid") contains additional protonated forms obtained by titrating protons with pKa between 5.75 and 8.25. The low pH range ("lo") contains additional protonated forms between pH 4.5-7 and the high pH range ("hi") contains additional protonation forms between pH 7-9.5.

Databases are divided into chunks for easier download. mol2 and sdf slices are 100MB or less uncompressed. Flexibase are 160MB or less uncompressed.

To download all files in the usual pH range (5.75-8.25) use "Usual". To download databases for metalloenzymes use "Metal", which adds the pH range 7-9.5 to usual above. For the entire pH range 4.5-9.5 please use "All".

We also offer tables of Molecular Properties, purchasing information, and Inchi files.

A product of BCIRC, the Bioinfomatics and Chemical Informatics Research Center @ UCSF. Last updated Aug 6, 2009. questions and discussion to zinc-fans at docking.org; bug reports to support at docking.org; any other correspondence to comments at docking.org. Terms of use. Privacy policy.